Miyakogusa Predicted Gene

Lj2g3v0661570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KQK4_SOYBN 843 94.3 95.7 (tr|I1KQK4) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT5G12250.1 823 91.7 95.3 | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449
Medicago Medtr8g107250.1 834 93.4 96.0 | tubulin | HC | chr8:45318751-45321187 | 20130731
Soybean Glyma05g33830.1 842 94.5 96.0  
LJGI gnl|LJGI|GO007518 1386 99.6 99.6 homologue to UniRef100_Q8RU83 Cluster: Tubulin beta-1; n=1; Gossypium hirsutum|Rep: Tubulin beta-1 - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), partial (53%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0661570.1 length: 445 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
FPrintScan PR01161 TUBULIN 1.1e-103 10-30
51-70
93-104
106-130
132-150
151-172
176-189
190-210
370-398
HMMPanther PTHR11588 TUBULIN 0 1-445
IPR002453 Beta tubulin
Molecular Function GO:0005200 structural constituent of cytoskeleton    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
FPrintScan PR01163 BETATUBULIN 1.6e-118 41-58
88-99
108-126
152-164
212-224
230-239
245-258
265-281
311-329
329-343
347-370
377-388
412-430
IPR003008 Tubulin/FtsZ, GTPase domain
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.40.50.1440 no description 3.4e-144 1-263
HMMPfam PF00091 Tubulin 5.1e-71 3-222
HMMSmart SM00864 Tubulin/FtsZ 2.2e-70 47-244
superfamily SSF52490 Tubulin 4.3e-104 1-243
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
superfamily SSF55307 Tubulin 4.6e-79 244-427
IPR013838 Beta tubulin, autoregulation binding site
PatternScan PS00228 TUBULIN_B_AUTOREG NA 1-4
IPR017975 Tubulin, conserved site
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
PatternScan PS00227 TUBULIN NA 140-146
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.30.1330.20 no description 9.7e-50 264-373
HMMPfam PF03953 Tubulin_C 6.8e-48 261-382
HMMSmart SM00865 Tubulin/FtsZ 7.8e-42 246-383
IPR023123 Tubulin, C-terminal
Gene3D G3DSA:1.10.287.600 no description 6.2e-34 374-430
no_ID  
Coil coil coiled-coil NA 408-443
Seg seg seg NA 138-151
423-442
Wolf-PSORT
Lj2g3v0661570.1	nucl 6, cyto 5, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0661570.1 Not targeted -65.412 0 -26.520 93.34% -38.891