Miyakogusa Predicted Gene

Lj2g3v0658160.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KQB2_MEDTR 1525 74.6 81.1 (tr|G7KQB2) Transcriptional repressor NF-X1-like protein OS=Medicago truncatula GN=MTR_6g071140 PE=4 SV=1
TAIR_pep AT1G10170.1 1276 62.5 72.4 | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333925-3337491 REVERSE LENGTH=1188
Medicago Medtr6g071140.1 1525 74.6 81.1 | NF-X1-type zinc finger protein NFXL1 | HC | chr6:26281287-26286488 | 20130731
Soybean Glyma09g30340.1 1446 74.3 81.0  
LJGI gnl|LJGI|TC63397 1526 99.9 99.9 similar to UniRef100_A7PHC3 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0658160.1 length: 1121 aa.
IPR000967 Zinc finger, NF-X1-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01422 zf-NF-X1 0.00012 308-326
HMMSmart SM00438 no description 0.028 253-271
308-327
372-391
430-449
488-522
526-545
583-601
636-666
675-696
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 9.214 141-197
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.1e-05 908-963
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 141-196
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
ProfileScan PS50016 ZF_PHD_2 8.600 138-199
no_ID  
Coil coil coiled-coil NA 83-104
HMMPanther PTHR12360 NUCLEAR 0 87-1058
HMMPanther PTHR12360:SF0 TRANSCRIPTIONAL 0 87-1058
Seg seg seg NA 6-14
19-24
33-42
62-85
94-103
361-373
561-571
967-992
1060-1065
superfamily SSF57850 RING/U-box 2.1e-07 126-203
Wolf-PSORT
Lj2g3v0658160.1	nucl 8, chlo 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0658160.1