Miyakogusa Predicted Gene

Lj2g3v0636230.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KHW2_MEDTR 625 54.5 69.1 (tr|G7KHW2) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_6g072030 PE=4 SV=1
TAIR_pep AT1G12700.1 359 36.2 56.8 | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735
Medicago Medtr6g072030.1 625 54.0 68.6 | pentatricopeptide (PPR) repeat protein | HC | chr6:26701564-26699663 | 20130731
Soybean Glyma09g30500.1 459 49.1 68.4  
LJGI gnl|LJGI|DC594578 581 98.7 98.7 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like helical; n=1; Medicago truncatula|Rep: Tetratricopeptide-like helical - Medicago truncatula (Barrel medic), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0636230.3 length: 649 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2.4e-08 167-197
276-307
381-412
HMMPfam PF13041 PPR_2 6.9e-16 209-257
314-363
422-468
489-538
563-608
HMMPfam PF13812 PPR_3 0.016 102-132
HMMTigr TIGR00756 PPR: 5.3e-11 103-135
174-199
212-245
247-280
285-316
317-351
353-385
387-421
422-456
458-489
492-525
527-561
563-596
ProfileScan PS51375 PPR 9.679 66-100
101-135
210-244
172-206
137-171
245-279
280-314
315-349
350-384
385-419
420-454
455-489
490-524
525-559
560-594
595-629
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9e-15 522-590
no_ID  
HMMPanther PTHR24015 FAMILY 5.5e-186 48-612
HMMPanther PTHR24015:SF0 SUBFAMILY 5.5e-186 48-612
Seg seg seg NA 35-54
superfamily SSF48452 TPR-like 1.6e-05 259-507
523-627
Wolf-PSORT
Lj2g3v0636230.3	chlo 9, plas 2, E.R. 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0636230.3