Miyakogusa Predicted Gene

Lj2g3v0633870.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7JP36_MEDTR 981 80.1 87.9 (tr|G7JP36) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_4g016590 PE=4 SV=1

TAIR_pep AT3G17740.1 682 56.2 73.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr3:6068003-6072814 REVERSE LENGTH=1149

Medicago Medtr4g016590.1 982 80.1 87.9 | UPF0614 C14orf102-like protein | HC | chr4:5074660-5083977 | 20130731

Soybean Glyma16g34520.1 968 79.7 89.0

LJGI gnl|LJGI|TC72794 942 99.8 99.8 similar to UniRef100_A7QW89 Cluster: Chromosome undetermined scaffold_200, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_200, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v0633870.2 length: 591 aa.

IPR003107 RNA-processing protein, HAT helix

method AccNumber shortName E-value location

Cellular Component GO:0005622 intracellular

Biological Process GO:0006396 RNA processing

HMMSmart SM00386 HAT 1.1e+03 256-296
455-486
489-523
526-558

IPR013633 siRNA-mediated silencing protein NRDE-2

HMMPfam PF08424 NRDE-2 8.5e-08 24-118

no_ID

HMMPanther PTHR13471 TETRATRICOPEPTIDE-LIKE 4.9e-99 12-591

Seg seg seg NA 64-81

Wolf-PSORT

Lj2g3v0633870.2 nucl 13.5, cyto_nucl 7.5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v0633870.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7JP36_MEDTR	981	80.1	87.9	(tr\|G7JP36) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_4g016590 PE=4 SV=1
TAIR_pep	AT3G17740.1	682	56.2	73.3	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). \| chr3:6068003-6072814 REVERSE LENGTH=1149
Medicago	Medtr4g016590.1	982	80.1	87.9	\| UPF0614 C14orf102-like protein \| HC \| chr4:5074660-5083977 \| 20130731
Soybean	Glyma16g34520.1	968	79.7	89.0
LJGI	gnl\|LJGI\|TC72794	942	99.8	99.8	similar to UniRef100_A7QW89 Cluster: Chromosome undetermined scaffold_200, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_200, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

IPR003107	RNA-processing protein, HAT helix
Lj2g3v0633870.2				length: 591 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005622	intracellular
Biological Process	GO:0006396	RNA processing
HMMSmart	SM00386	HAT	1.1e+03	256-296 455-486 489-523 526-558
IPR013633	siRNA-mediated silencing protein NRDE-2
HMMPfam	PF08424	NRDE-2	8.5e-08	24-118
no_ID
HMMPanther	PTHR13471	TETRATRICOPEPTIDE-LIKE	4.9e-99	12-591
Seg	seg	seg	NA	64-81