Miyakogusa Predicted Gene
- Lj2g3v0632410.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MFB8_SOYBN |
229 |
42.1 |
55.4 |
(tr|I1MFB8) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT3G23880.1 |
119 |
35.2 |
49.7 |
| Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364 |
| Medicago |
Medtr2g029990.1 |
231 |
40.3 |
56.5 |
| F-box protein interaction domain protein | HC | chr2:11236669-11238596 | 20130731 |
| Soybean |
Glyma15g10860.1 |
229 |
41.3 |
54.6 |
|
| LJGI |
gnl|LJGI|FS328144 |
922 |
99.8 |
99.8 |
similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_67, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v0632410.1 |
length: 406 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
3e-10 |
50-95 |
| HMMSmart |
SM00256 |
A |
3.7e-08 |
54-94 |
| ProfileScan |
PS50181 |
FBOX |
12.147 |
48-94 |
| superfamily |
SSF81383 |
F-box |
1.1e-15 |
41-96 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
1.1e-29 |
146-328 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
3.9e-10 |
52-90 |
| HMMPanther |
PTHR32133 |
FAMILY |
1.6e-20 |
49-276 |
| HMMPanther |
PTHR32133:SF0 |
SUBFAMILY |
1.6e-20 |
49-276 |
| Seg |
seg |
seg |
NA |
23-55 |
- Wolf-PSORT
Lj2g3v0632410.1 cyto 8, nucl 2, mito 2, chlo 1, cysk 1, cyto_mito 1, nucl_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v0632410.1 |
|