| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | B7FJ52_MEDTR | 386 | 78.0 | 80.8 | (tr|B7FJ52) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep | AT2G47580.1 | 288 | 63.1 | 70.7 | | Symbols: U1A | spliceosomal protein U1A | chr2:19517229-19518686 FORWARD LENGTH=250 |
| Medicago | Medtr4g084990.2 | 386 | 78.0 | 80.8 | | U1 small nuclear ribonucleoprotein | HC | chr4:33189422-33193785 | 20130731 |
| Soybean | Glyma03g41400.1 | 354 | 78.1 | 81.4 | |
| LJGI | gnl|LJGI|TC62598 | 1439 | 100.0 | 100.0 | similar to UniRef100_Q41498 Cluster: U1snRNP-specific protein, U1A; n=1; Solanum tuberosum|Rep: U1snRNP-specific protein, U1A - Solanum tuberosum (Potato), partial (92%) |
| Lj2g3v0592880.1 | length: 241 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 1.9e-12 | 169-228 |
| HMMSmart | SM00360 | RNA | 2.4e-10 | 15-89 168-237 |
| ProfileScan | PS50102 | RRM | 12.356 | 14-93 167-241 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 3.5e-20 | 9-96 159-240 |
| IPR024888 | U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' | |||
| Biological Process | GO:0000398 | mRNA splicing, via spliceosome | ||
| Molecular Function | GO:0017069 | snRNA binding | ||
| HMMPanther | PTHR10501 | U1 | 3.5e-121 | 9-241 |
| no_ID | ||||
| HMMPanther | PTHR10501:SF0 | SMALL | 3.5e-121 | 9-241 |
| HMMPfam | PF13893 | RRM_5 | 9.5e-12 | 34-91 |
| Seg | seg | seg | NA | 18-34 91-102 |
| superfamily | SSF54928 | RNA-binding | 1.6e-23 | 11-241 |
Lj2g3v0592880.1 nucl 11, cyto 3
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj2g3v0592880.1 |