Miyakogusa Predicted Gene

Lj2g3v0536880.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KPA0_MEDTR 1170 70.4 76.8 (tr|G7KPA0) Chloride channel protein CLC-c OS=Medicago truncatula GN=MTR_6g065650 PE=4 SV=1
TAIR_pep AT5G49890.1 917 58.2 69.5 | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779
Medicago Medtr6g065650.3 1184 72.7 79.3 | chloride channel ClC1 protein | HC | chr6:24335319-24327709 | 20130731
Soybean Glyma09g28620.1 966 70.3 76.0  
LJGI gnl|LJGI|TC72370 1477 99.6 99.6 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined scaffold_147, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_147, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0536880.1 length: 797 aa.
IPR000644 Cystathionine beta-synthase, core
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00571 CBS 0.0018 615-675
733-779
ProfileScan PS51371 CBS 9.676 614-683
729-791
IPR001807 Chloride channel, voltage gated
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
FPrintScan PR00762 CLCHANNEL 1.9e-64 181-198
212-231
276-295
501-521
533-549
551-570
589-603
HMMPfam PF00654 Voltage_CLC 4.2e-84 168-583
IPR002251 Chloride channel ClC-plant
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01120 CLCHANNELPLT 1.8e-21 86-94
297-305
311-321
329-336
453-469
IPR014743 Chloride channel, core
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0055085 transmembrane transport    
Gene3D G3DSA:1.10.3080.10 no description 1.1e-122 457-608
superfamily SSF81340 Clc 3.1e-99 89-606
no_ID  
Gene3D G3DSA:3.10.580.10 no description 3.1e-12 717-780
HMMPanther PTHR11689 CHLORIDE 0 13-796
HMMPanther PTHR11689:SF11 CHLORIDE 0 13-796
Seg seg seg NA 115-127
160-184
274-290
533-546
558-576
661-674
710-721
superfamily SSF54631 CBS-domain 1.3e-08 603-685
716-780
Wolf-PSORT
Lj2g3v0536880.1	plas 10, golg 2, vacu 1, E.R. 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0536880.1