Miyakogusa Predicted Gene

Lj2g3v0435440.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NGP9_SOYBN 442 65.3 68.9 (tr|I1NGP9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G25500.4 263 45.1 54.9 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350
Medicago Medtr1g101520.1 403 58.6 64.3 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr1:45856698-45851996 | 20130731
Soybean Glyma20g29460.1 442 65.3 68.9  
LJGI gnl|LJGI|TC72764 1217 100.0 100.0 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein; n=1; Vitis riparia|Rep: Splicing factor-like protein - Vitis riparia (Frost grape) (Vitis vulpina), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0435440.1 length: 379 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.2e-14 4-62
97-159
HMMSmart SM00360 RNA 5.7e-19 3-70
96-162
ProfileScan PS50102 RRM 16.023 2-74
95-166
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.2e-18 1-75
84-172
no_ID  
HMMPanther PTHR10548 SPLICING 1.4e-109 1-316
HMMPanther PTHR10548:SF23 ARGININE/SERINE-RICH 1.4e-109 1-316
Seg seg seg NA 43-59
79-96
179-200
224-242
342-353
superfamily SSF54928 RNA-binding 5.2e-33 1-173
Wolf-PSORT
Lj2g3v0435440.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0435440.1