Miyakogusa Predicted Gene

Lj2g3v0425390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LEJ4_SOYBN 721 67.3 84.1 (tr|K7LEJ4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G62670.1 405 38.5 60.6 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630
Medicago Medtr7g012890.1 714 68.1 84.4 | pentatricopeptide (PPR) repeat protein | LC | chr7:3641843-3643495 | 20130731
Soybean Glyma09g30530.1 718 67.3 83.9  
LJGI gnl|LJGI|GO037297 1047 99.6 99.6 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0425390.1 length: 534 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 1.3e-07 154-185
260-291
295-326
HMMPfam PF13041 PPR_2 4.2e-11 88-136
193-241
333-382
404-451
474-520
HMMTigr TIGR00756 PPR: 7.6e-08 91-125
126-159
161-188
196-229
231-263
267-300
301-335
337-370
371-401
406-439
441-474
477-509
ProfileScan PS51375 PPR 7.432 18-53
54-88
89-123
124-158
159-193
194-228
229-263
264-298
299-333
334-368
369-403
404-438
439-473
474-508
509-534
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.9e-05 393-465
no_ID  
HMMPanther PTHR24015 FAMILY 9.3e-171 31-533
HMMPanther PTHR24015:SF0 SUBFAMILY 9.3e-171 31-533
Seg seg seg NA 14-27
superfamily SSF48452 TPR-like 0.0029 87-186
369-467
Wolf-PSORT
Lj2g3v0425390.1	chlo 7, mito 2, extr 2, cyto 1, E.R. 1, pero 1, cyto_mito 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0425390.1