Miyakogusa Predicted Gene

Lj2g3v0371570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L565_MEDTR 732 68.6 83.1 (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1
TAIR_pep AT1G12700.1 404 38.4 61.6 | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735
Medicago Medtr0308s0020.1 738 68.4 84.1 | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731
Soybean Glyma09g30530.1 728 66.7 84.0  
LJGI gnl|LJGI|GO037297 854 95.4 95.4 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0371570.1 length: 546 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2e-11 153-184
258-290
364-395
HMMPfam PF13041 PPR_2 5.4e-13 87-135
192-240
297-346
403-451
473-519
HMMTigr TIGR00756 PPR: 3.2e-08 91-124
125-158
160-186
195-229
230-264
265-298
300-334
336-369
370-399
405-438
440-473
475-508
ProfileScan PS51375 PPR 10.019 88-122
53-87
123-157
158-192
193-227
228-262
263-297
298-332
333-367
368-402
403-437
438-472
473-507
508-542
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.4e-05 68-287
no_ID  
HMMPanther PTHR24015 FAMILY 1.1e-173 34-540
HMMPanther PTHR24015:SF0 SUBFAMILY 1.1e-173 34-540
Seg seg seg NA 13-33
superfamily SSF48452 TPR-like 0.0038 438-537
superfamily SSF81901 HCP-like 3.8e-06 91-341
Wolf-PSORT
Lj2g3v0371570.1	chlo 7, extr 2, mito 1.5, cyto_mito 1.5, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0371570.1