database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | G7L565_MEDTR | 732 | 68.6 | 83.1 | (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1 |
TAIR_pep | AT1G12700.1 | 404 | 38.4 | 61.6 | | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735 |
Medicago | Medtr0308s0020.1 | 738 | 68.4 | 84.1 | | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731 |
Soybean | Glyma09g30530.1 | 728 | 66.7 | 84.0 | |
LJGI | gnl|LJGI|GO037297 | 854 | 95.4 | 95.4 | weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
Lj2g3v0371570.1 | length: 546 aa. | |||
IPR002885 | Pentatricopeptide repeat | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
HMMPfam | PF12854 | PPR_1 | 2e-11 | 153-184 258-290 364-395 |
HMMPfam | PF13041 | PPR_2 | 5.4e-13 | 87-135 192-240 297-346 403-451 473-519 |
HMMTigr | TIGR00756 | PPR: | 3.2e-08 | 91-124 125-158 160-186 195-229 230-264 265-298 300-334 336-369 370-399 405-438 440-473 475-508 |
ProfileScan | PS51375 | PPR | 10.019 | 88-122 53-87 123-157 158-192 193-227 228-262 263-297 298-332 333-367 368-402 403-437 438-472 473-507 508-542 |
IPR011990 | Tetratricopeptide-like helical | |||
Molecular Function | GO:0005515 | protein binding | ||
Gene3D | G3DSA:1.25.40.10 | no description | 2.4e-05 | 68-287 |
no_ID | ||||
HMMPanther | PTHR24015 | FAMILY | 1.1e-173 | 34-540 |
HMMPanther | PTHR24015:SF0 | SUBFAMILY | 1.1e-173 | 34-540 |
Seg | seg | seg | NA | 13-33 |
superfamily | SSF48452 | TPR-like | 0.0038 | 438-537 |
superfamily | SSF81901 | HCP-like | 3.8e-06 | 91-341 |
Lj2g3v0371570.1 chlo 7, extr 2, mito 1.5, cyto_mito 1.5, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj2g3v0371570.1 |