Miyakogusa Predicted Gene

Lj2g3v0344980.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KI94_SOYBN 506 77.4 79.9 (tr|I1KI94) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G61415.2 397 61.0 69.2 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22723052-22725577 REVERSE LENGTH=349
Medicago Medtr8g030670.1 486 71.7 77.7 | ubiquitin-protein ligase, putative | HC | chr8:11365706-11369963 | 20130731
Soybean Glyma09g39480.1 499 73.1 79.1  
LJGI gnl|LJGI|BP033484 729 100.0 100.0 similar to UniRef100_Q2HTK9 Cluster: SKP1 component; n=1; Medicago truncatula|Rep: SKP1 component - Medicago truncatula (Barrel medic), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0344980.1 length: 347 aa.
IPR001232 SKP1 component
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPanther PTHR11165 SKP1 2.7e-151 7-334
HMMSmart SM00512 Found 4.9e-27 15-116
IPR011333 BTB/POZ fold
Gene3D G3DSA:3.30.710.10 no description 6.3e-32 12-156
superfamily SSF54695 POZ 1.3e-09 16-82
IPR016072 SKP1 component, dimerisation
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF01466 Skp1 5.5e-19 90-159
superfamily SSF81382 Skp1 3.9e-18 84-150
IPR016073 SKP1 component, POZ
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF03931 Skp1_POZ 6.8e-06 17-80
no_ID  
Coil coil coiled-coil NA 222-249
HMMPanther PTHR11165:SF22 SKP1-RELATED 2.7e-151 7-334
Seg seg seg NA 176-188
216-236
285-294
Wolf-PSORT
Lj2g3v0344980.1	nucl 7, cyto 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0344980.1