Miyakogusa Predicted Gene

Lj2g3v0156840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LAL7_MEDTR 475 97.0 99.6 (tr|G7LAL7) 40S ribosomal protein S2 OS=Medicago truncatula GN=MTR_8g105340 PE=1 SV=1
TAIR_pep AT3G57490.1 422 90.5 96.4 | Symbols: | Ribosomal protein S5 family protein | chr3:21279824-21280887 REVERSE LENGTH=276
Medicago Medtr8g105340.1 475 97.0 99.6 | 40S ribosomal protein S2-4 | HC | chr8:44446803-44449076 | 20130731
Soybean Glyma05g34570.1 472 97.4 99.1  
LJGI gnl|LJGI|TC80759 1772 100.0 100.0 homologue to UniRef100_A7PWE1 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0156840.1 length: 320 aa.
IPR000851 Ribosomal protein S5
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPanther PTHR13718 RIBOSOMAL 3.9e-164 46-305
IPR005324 Ribosomal protein S5, C-terminal
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF03719 Ribosomal_S5_C 5e-23 214-280
IPR005711 Ribosomal protein S5, eukaryotic/archaeal
Molecular Function GO:0003735 structural constituent of ribosome    
Biological Process GO:0006412 translation    
Cellular Component GO:0015935 small ribosomal subunit    
HMMTigr TIGR01020 rpsE_arch: 3.5e-93 85-292
IPR013810 Ribosomal protein S5, N-terminal
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF00333 Ribosomal_S5 7.9e-29 132-197
ProfileScan PS50881 S5_DSRBD 22.821 132-195
IPR014720 Double-stranded RNA-binding-like domain
Gene3D G3DSA:3.30.160.20 no description 5.6e-33 129-194
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 3.2e-34 203-278
IPR018192 Ribosomal protein S5, N-terminal, conserved site
PatternScan PS00585 RIBOSOMAL_S5 NA 149-181
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 1.1e-27 208-289
no_ID  
Seg seg seg NA 44-84
superfamily SSF54768 dsRNA-binding 6.7e-23 131-199
Wolf-PSORT
Lj2g3v0156840.1	cyto 6, chlo 5, vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0156840.1