Miyakogusa Predicted Gene
- Lj2g3v0044990.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S717_LOTJA |
113 |
92.7 |
94.5 |
(tr|I3S717) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G17590.1 |
106 |
83.6 |
89.1 |
| Symbols: BSH, CHE1 | transcription regulatory protein SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=240 |
| Medicago |
Medtr4g124260.1 |
109 |
87.3 |
92.7 |
| chromatin structure-remodeling complex protein BSH | HC | chr4:51314560-51311204 | 20130731 |
| Soybean |
Glyma13g17760.1 |
111 |
90.9 |
92.7 |
|
| LJGI |
gnl|LJGI|TC57219 |
280 |
96.4 |
96.4 |
homologue to UniRef100_A5X538 Cluster: SNF5; n=1; Pisum sativum|Rep: SNF5 - Pisum sativum (Garden pea), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v0044990.2 |
length: 105 aa. |
| IPR003653 |
Peptidase C48, SUMO/Sentrin/Ubl1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006508 |
proteolysis |
|
|
| Molecular Function |
GO:0008234 |
cysteine-type peptidase activity |
|
|
| HMMPfam |
PF02902 |
Peptidase_C48 |
4.8e-05 |
54-96 |
| IPR006939 |
SNF5/SMARCB1/INI1 |
| Cellular Component |
GO:0000228 |
nuclear chromosome |
|
|
| Biological Process |
GO:0006338 |
chromatin remodeling |
|
|
| HMMPanther |
PTHR10019 |
SNF5 |
1.1e-12 |
4-55 |
| HMMPfam |
PF04855 |
SNF5 |
6.4e-10 |
5-51 |
| no_ID |
|
| superfamily |
SSF54001 |
Cysteine |
1.4e-06 |
49-97 |
- Wolf-PSORT
Lj2g3v0044990.2 cyto 7, nucl 3, chlo 1, mito 1, extr 1, golg 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v0044990.2 |
|