Miyakogusa Predicted Gene

Lj2g3v0039360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SGA6_LOTJA 359 100.0 100.0 (tr|I3SGA6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G59180.1 336 90.9 97.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176
Medicago Medtr4g096810.1 352 96.0 98.9 | DNA-directed RNA polymerase II subunit Rpb7 | HC | chr4:38520748-38524543 | 20130731
Soybean Glyma08g09000.1 354 97.2 98.9  
LJGI gnl|LJGI|TC57712 1059 100.0 100.0 homologue to UniRef100_P46279 Cluster: DNA-directed RNA polymerase II subunit RPB7; n=1; Glycine max|Rep: DNA-directed RNA polymerase II subunit RPB7 - Glycine max (Soybean), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0039360.1 length: 176 aa.
IPR003029 Ribosomal protein S1, RNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00575 S1 8e-14 78-156
IPR005576 RNA polymerase Rpb7, N-terminal
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:3.30.1490.120 no description 1e-27 1-82
HMMPfam PF03876 SHS2_Rpb7-N 1.5e-18 9-77
superfamily SSF88798 N-terminal, 5e-24 1-77
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 7.7e-34 83-170
superfamily SSF50249 Nucleic 5.4e-22 79-170
no_ID  
HMMPanther PTHR12709 DNA-DIRECTED 1.2e-74 2-170
Wolf-PSORT
Lj2g3v0039360.1	cyto 10, nucl 2, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0039360.1