Miyakogusa Predicted Gene

Lj1g3v5062660.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JS72_SOYBN 1053 70.7 79.9 (tr|I1JS72) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G72320.1 682 50.2 66.8 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753
Medicago Medtr7g117545.1 1028 73.5 82.9 | pumilio-family RNA-binding repeatprotein | HC | chr7:48703739-48696573 | 20130731
Soybean Glyma03g42410.1 1031 68.3 77.3  
LJGI gnl|LJGI|TC71554 1061 100.0 100.0 similar to UniRef100_A7P6A5 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5062660.1 length: 740 aa.
IPR001313 Pumilio RNA-binding repeat
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00806 PUF 6.7e-06 352-381
HMMSmart SM00025 Pumilio-like 27 96-131
132-167
313-348
350-385
495-531
532-567
ProfileScan PS50302 PUM 7.311 128-167
175-198
253-292
349-386
313-348
494-531
532-567
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 1.2e-37 503-604
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 1.6e-19 248-589
76-198
no_ID  
HMMPanther PTHR13102 PROTEIN 3.3e-150 53-699
HMMPanther PTHR13102:SF0 SUBFAMILY 3.3e-150 53-699
Seg seg seg NA 23-35
75-88
669-682
692-701
Wolf-PSORT
Lj1g3v5062660.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5062660.1