Miyakogusa Predicted Gene
- Lj1g3v5061300.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JS66_SOYBN |
753 |
99.5 |
99.5 |
(tr|I1JS66) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G53750.1 |
746 |
98.6 |
99.2 |
| Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426 |
| Medicago |
Medtr1g095660.1 |
719 |
95.2 |
95.5 |
| 26S proteasome regulatory complex protein | HC | chr1:43052936-43050351 | 20130731 |
| Soybean |
Glyma03g42370.3 |
753 |
99.5 |
99.5 |
|
| LJGI |
gnl|LJGI|TC60911 |
1372 |
90.6 |
90.6 |
homologue to UniRef100_Q41365 Cluster: 26S protease regulatory subunit 7; n=4; Magnoliophyta|Rep: 26S protease regulatory subunit 7 - Spinacia oleracea (Spinach), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v5061300.1 |
length: 377 aa. |
| IPR003593 |
AAA+ ATPase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
2.6e-20 |
152-291 |
| IPR003959 |
ATPase, AAA-type, core |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00004 |
AAA |
7e-40 |
156-288 |
| IPR003960 |
ATPase, AAA-type, conserved site |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| PatternScan |
PS00674 |
AAA |
NA |
259-277 |
| IPR005937 |
26S proteasome subunit P45 |
| Cellular Component |
GO:0005737 |
cytoplasm |
|
|
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| Biological Process |
GO:0030163 |
protein catabolic process |
|
|
| HMMTigr |
TIGR01242 |
26Sp45: |
1.8e-124 |
50-360 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.5e-70 |
108-361 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.8.60 |
no description |
1.7e-23 |
299-363 |
| Gene3D |
G3DSA:3.40.50.300 |
no description |
9.5e-58 |
109-298 |
| HMMPanther |
PTHR23073 |
26S |
0 |
9-377 |
| HMMPanther |
PTHR23073:SF13 |
26S |
0 |
9-377 |
- Wolf-PSORT
Lj1g3v5061300.1 cyto 8, extr 2, chlo 1, nucl 1, cysk 1, golg 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v5061300.1 |
|