Miyakogusa Predicted Gene

Lj1g3v5061060.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LPL5_SOYBN 1108 69.1 78.6 (tr|K7LPL5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G01570.1 850 54.8 68.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:679487-681904 FORWARD LENGTH=805
Medicago Medtr7g016910.1 1044 66.0 76.3 | pentatricopeptide (PPR) repeat protein | HC | chr7:5347631-5344253 | 20130731
Soybean Glyma11g14350.1 832 61.5 69.1  
LJGI gnl|LJGI|TC67561 898 98.7 98.7 similar to UniRef100_Q2HSE6 Cluster: Pentatricopeptide repeat; n=1; Medicago truncatula|Rep: Pentatricopeptide repeat - Medicago truncatula (Barrel medic), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5061060.1 length: 788 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.2 242-265
HMMPfam PF12854 PPR_1 1e-07 405-437
HMMPfam PF13041 PPR_2 6.8e-16 268-317
338-387
617-663
686-729
HMMTigr TIGR00756 PPR: 3.5e-08 271-296
306-339
341-374
377-405
411-444
618-645
654-686
688-722
723-756
ProfileScan PS51375 PPR 12.551 113-147
78-112
151-181
202-237
269-303
238-268
304-338
339-373
374-408
409-443
444-478
581-615
616-650
651-685
686-720
721-755
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00042 618-756
no_ID  
HMMPanther PTHR24015 FAMILY 9.1e-125 53-769
HMMPanther PTHR24015:SF0 SUBFAMILY 9.1e-125 53-769
Seg seg seg NA 95-103
183-192
420-438
superfamily SSF48452 TPR-like 0.0013 339-436
649-750
Wolf-PSORT
Lj1g3v5061060.1	chlo 9, cyto 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5061060.1