Miyakogusa Predicted Gene

Lj1g3v5061000.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N0F5_SOYBN 2141 81.1 85.9 (tr|K7N0F5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G01040.1 1803 69.8 79.3 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1909
Medicago Medtr7g118350.1 1980 77.9 82.9 | endoribonuclease dicer-like protein | HC | chr7:49139858-49129556 | 20130731
Soybean Glyma03g42290.2 2051 78.8 83.4  
LJGI gnl|LJGI|TC68118 1824 99.7 99.7 homologue to UniRef100_Q2HTA7 Cluster: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial; n=1; Medicago truncatula|Rep: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial - Medicago truncatula (Barrel medic), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5061000.1 length: 1347 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2e-14 737-805
HMMSmart SM00490 helicase 8.7e-11 722-808
ProfileScan PS51194 HELICASE_CTER 14.398 692-853
IPR003100 Argonaute/Dicer protein, PAZ
Molecular Function GO:0005515 protein binding    
HMMPfam PF02170 PAZ 1.7e-11 1225-1305
HMMSmart SM00949 no description 0.003 1224-1341
ProfileScan PS50821 PAZ 14.220 1224-1305
IPR005034 Dicer double-stranded RNA-binding fold
Molecular Function GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters    
HMMPfam PF03368 dsRNA_bind 5.3e-25 881-970
ProfileScan PS51327 DICER_DSRBF 24.136 881-976
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.4e-14 289-452
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.1e-19 282-485
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.714 293-470
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-42 332-830
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.1e-22 276-451
687-822
HMMPanther PTHR14950 HELICASE-RELATED 0 246-1303
HMMPanther PTHR14950:SF13 DCL4 0 246-1303
Seg seg seg NA 13-28
49-56
93-102
646-660
Wolf-PSORT
Lj1g3v5061000.1	nucl 3.5, chlo 3, cysk_nucl 2.5, E.R. 2, chlo_mito 2, cyto 1, mito 1, plas 1, extr 1, vacu 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5061000.1