Miyakogusa Predicted Gene

Lj1g3v5038210.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SSH7_LOTJA 234 99.1 99.1 (tr|I3SSH7) DNA-directed RNA polymerase subunit OS=Lotus japonicus PE=3 SV=1
TAIR_pep AT1G01210.1 129 55.9 70.3 | Symbols: | DNA-directed RNA polymerase, subunit M, archaeal | chr1:88977-89529 FORWARD LENGTH=106
Medicago Medtr5g030180.2 147 61.7 74.8 | DNA-directed RNA polymerase subunit | HC | chr5:12700149-12698230 | 20130731
Soybean Glyma18g39550.1 165 68.5 77.5  
LJGI gnl|LJGI|TC66733 666 100.0 100.0 weakly similar to UniRef100_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=1; Oryza sativa Japonica Group|Rep: DNA-directed RNA polymerase subunit - Oryza sativa subsp. japonica (Rice), partial (55%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5038210.2 length: 111 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01096 TFIIS_C 3.3e-17 70-109
HMMSmart SM00440 C2C2 3e-18 69-110
PatternScan PS00466 ZF_TFIIS_1 NA 71-108
ProfileScan PS51133 ZF_TFIIS_2 13.957 67-109
IPR001529 DNA-directed RNA polymerase, M/15kDa subunit
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00661 RNA 7.8e-06 2-56
no_ID  
Gene3D G3DSA:2.20.25.10 no description 5.4e-22 59-111
Gene3D G3DSA:2.20.70.10 no description 1.8e-05 1-34
HMMPanther PTHR11239 DNA-DIRECTED 6.2e-36 1-111
HMMPanther PTHR11239:SF2 DNA-DIRECTED 6.2e-36 1-111
superfamily SSF57783 Zinc 9.6e-19 46-111
Wolf-PSORT
Lj1g3v5038210.2	mito 6, chlo 3, cyto 3, cyto_mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5038210.2