Miyakogusa Predicted Gene
- Lj1g3v5035080.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KH37_SOYBN |
917 |
70.8 |
77.1 |
(tr|K7KH37) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G23980.1 |
640 |
53.8 |
67.0 |
| Symbols: ARF9 | auxin response factor 9 | chr4:12451592-12454737 FORWARD LENGTH=638 |
| Medicago |
Medtr8g027440.1 |
861 |
64.9 |
74.9 |
| auxin response factor 2 | HC | chr8:9733998-9728759 | 20130731 |
| Soybean |
Glyma16g02650.1 |
865 |
65.3 |
73.9 |
|
| LJGI |
gnl|LJGI|DC593681 |
58.0 |
86.2 |
86.2 |
similar to UniRef100_A7QU71 Cluster: Chromosome chr2 scaffold_176, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_176, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v5035080.1 |
length: 683 aa. |
| IPR003311 |
AUX/IAA protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02309 |
AUX_IAA |
1.3e-26 |
553-659 |
| IPR003340 |
B3 DNA binding domain |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02362 |
B3 |
1e-20 |
133-233 |
| HMMSmart |
SM01019 |
B3 |
8.5e-20 |
133-235 |
| ProfileScan |
PS50863 |
B3 |
11.758 |
133-235 |
| IPR010525 |
Auxin response factor |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Biological Process |
GO:0009725 |
response to hormone stimulus |
|
|
| HMMPfam |
PF06507 |
Auxin_resp |
4.5e-29 |
259-338 |
| IPR011525 |
Aux/IAA-ARF-dimerisation |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| ProfileScan |
PS50962 |
IAA_ARF |
27.248 |
575-656 |
| IPR015300 |
DNA-binding pseudobarrel domain |
| Gene3D |
G3DSA:2.40.330.10 |
no description |
1.5e-37 |
125-248 |
| superfamily |
SSF101936 |
DNA-binding |
8.2e-44 |
116-263 |
| no_ID |
|
| HMMPanther |
PTHR31384 |
FAMILY |
8.3e-204 |
1-404 |
| Seg |
seg |
seg |
NA |
237-251 |
| superfamily |
SSF54277 |
CAD |
9.4e-12 |
562-654 |
- Wolf-PSORT
Lj1g3v5035080.1 nucl 4.5, chlo 3, plas 3, cysk_nucl 3, mito 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v5035080.1 |
|