Miyakogusa Predicted Gene

Lj1g3v5035060.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JS07_SOYBN 110 52.4 57.3 (tr|I1JS07) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G01250.1 81.6 44.1 50.8 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:104731-105309 REVERSE LENGTH=192

Medicago Medtr7g117690.1 99.4 51.7 56.7 | AP2 domain class transcription factor | HC | chr7:48856582-48857258 | 20130731

Soybean Glyma03g41910.1 110 52.4 57.3

LJGI gnl|LJGI|BP036840 712 100.0 100.0 homologue to UniRef100_A9PL83 Cluster: TINY-like protein; n=1; Populus trichocarpa|Rep: TINY-like protein - Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa), partial (53%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v5035060.1 length: 118 aa.

IPR001471 AP2/ERF domain

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Gene3D G3DSA:3.30.730.10 no description 2.2e-06 1-24

ProfileScan PS51032 AP2_ERF 8.676 1-23

no_ID

HMMPanther PTHR31985 FAMILY 2.8e-15 1-80

Seg seg seg NA 42-55
64-72
86-98

Wolf-PSORT

Lj1g3v5035060.1 mito 7, chlo 5, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v5035060.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JS07_SOYBN	110	52.4	57.3	(tr\|I1JS07) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G01250.1	81.6	44.1	50.8	\| Symbols: \| Integrase-type DNA-binding superfamily protein \| chr1:104731-105309 REVERSE LENGTH=192
Medicago	Medtr7g117690.1	99.4	51.7	56.7	\| AP2 domain class transcription factor \| HC \| chr7:48856582-48857258 \| 20130731
Soybean	Glyma03g41910.1	110	52.4	57.3
LJGI	gnl\|LJGI\|BP036840	712	100.0	100.0	homologue to UniRef100_A9PL83 Cluster: TINY-like protein; n=1; Populus trichocarpa\|Rep: TINY-like protein - Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa), partial (53%)

IPR001471	AP2/ERF domain
Lj1g3v5035060.1				length: 118 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Gene3D	G3DSA:3.30.730.10	no description	2.2e-06	1-24
ProfileScan	PS51032	AP2_ERF	8.676	1-23
no_ID
HMMPanther	PTHR31985	FAMILY	2.8e-15	1-80
Seg	seg	seg	NA	42-55 64-72 86-98