Miyakogusa Predicted Gene

Lj1g3v5034850.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL H8WVC3_LOTJA 643 100.0 100.0 (tr|H8WVC3) E3 ubiquitin ligase OS=Lotus japonicus GN=SINA1 PE=2 SV=1
TAIR_pep AT3G61790.1 524 78.8 85.5 | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326
Medicago Medtr8g027520.1 584 90.0 94.8 | ubiquitin ligase SINAT3 | HC | chr8:9833064-9837489 | 20130731
Soybean Glyma19g44520.1 606 96.6 98.0  
LJGI gnl|LJGI|TC66464 1818 99.9 99.9 homologue to UniRef100_A8W461 Cluster: SINA2; n=1; Medicago truncatula|Rep: SINA2 - Medicago truncatula (Barrel medic), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5034850.1 length: 306 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 0.0 44-80
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 PTHR10315 1.6999880237095304E-128 33-302
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 Traf_like 1.0E-49 97-289
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 0.0 97-157
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10G3DSA:3.30.40.10 T[35-109] 1.5000000000149165E-9  
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10G3DSA:3.90.890.10 T[110-152] 2.0000000001658727E-20  
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 1.2000000000000144E-72 86-285
no_ID  
Gene3D G3DSA:2.60.210.10G3DSA:2.60.210.10 T[162-289] 3.700000000281188E-58  
superfamily SSF57850 SSF57850 2.2999993566538006E-7 36-92
Wolf-PSORT
Lj1g3v5034850.1	nucl 6, cyto 5, chlo 1, extr 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5034850.1