Miyakogusa Predicted Gene
- Lj1g3v5033370.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SJH1_LOTJA |
329 |
53.0 |
66.4 |
(tr|I3SJH1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G06240.1 |
107 |
27.4 |
44.0 |
| Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 |
| Medicago |
Medtr4g023080.1 |
235 |
42.9 |
58.7 |
| galactose oxidase | LC | chr4:7770963-7772027 | 20130731 |
| Soybean |
Glyma07g37650.1 |
226 |
41.7 |
57.5 |
|
| LJGI |
gnl|LJGI|FS330715 |
1360 |
99.6 |
99.6 |
similar to UniRef100_A7PQD5 Cluster: Chromosome chr18 scaffold_24, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_24, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v5033370.1 |
length: 363 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
5.2e-06 |
11-45 |
| HMMSmart |
SM00256 |
A |
2.3e-06 |
9-48 |
| superfamily |
SSF81383 |
F-box |
3.7e-12 |
9-59 |
| IPR006527 |
F-box associated domain, type 1 |
| HMMPfam |
PF07734 |
FBA_1 |
1.4e-05 |
205-297 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
4.2e-21 |
98-318 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
2.8e-07 |
10-45 |
| HMMPanther |
PTHR31790 |
FAMILY |
4.2e-13 |
12-125 |
- Wolf-PSORT
Lj1g3v5033370.1 cyto 7, chlo 2, nucl 2, extr 1, cysk 1, chlo_mito 1, nucl_plas 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v5033370.1 |
|