Miyakogusa Predicted Gene
- Lj1g3v5021150.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
F6I675_VITVI |
473 |
75.8 |
83.9 |
(tr|F6I675) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01710 PE=3 SV=1 |
| TAIR_pep |
AT5G24090.1 |
365 |
58.7 |
73.4 |
| Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302 |
| Medicago |
Medtr7g116350.1 |
458 |
76.1 |
83.3 |
| class III chitinase | LC | chr7:47979788-47985392 | 20130731 |
| Soybean |
Glyma02g12660.1 |
441 |
74.0 |
82.2 |
|
| LJGI |
gnl|LJGI|TC74622 |
58.0 |
89.8 |
89.8 |
similar to UniRef100_P36908 Cluster: Acidic endochitinase precursor; n=2; Cicer arietinum|Rep: Acidic endochitinase precursor - Cicer arietinum (Chickpea) (Garbanzo), partial (41%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v5021150.1 |
length: 298 aa. |
| IPR001223 |
Glycoside hydrolase, family 18, catalytic domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| HMMPfam |
PF00704 |
Glyco_hydro_18 |
3.1e-34 |
29-249 |
| IPR001579 |
Glycoside hydrolase, chitinase active site |
| Molecular Function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| PatternScan |
PS01095 |
CHITINASE_18 |
NA |
144-152 |
| IPR013781 |
Glycoside hydrolase, catalytic domain |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| Gene3D |
G3DSA:3.20.20.80 |
no description |
9.7e-109 |
25-297 |
| IPR017853 |
Glycoside hydrolase, superfamily |
| superfamily |
SSF51445 |
(Trans)glycosidases |
2.7e-98 |
22-298 |
| no_ID |
|
| HMMPanther |
PTHR31939 |
FAMILY |
4.3e-175 |
1-298 |
| HMMPanther |
PTHR31939:SF0 |
SUBFAMILY |
4.3e-175 |
1-298 |
| Seg |
seg |
seg |
NA |
100-115 |
- Wolf-PSORT
Lj1g3v5021150.1 extr 7, vacu 3, chlo 1, nucl 1, mito 1, golg 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v5021150.1 |
|