Miyakogusa Predicted Gene

Lj1g3v4984100.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SVA0_MEDTR 295 63.7 69.8 (tr|I3SVA0) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1

TAIR_pep AT3G04730.1 263 60.8 67.7 | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236

Medicago Medtr1g080860.2 294 64.1 70.2 | auxin-responsive AUX/IAA family protein | HC | chr1:35977175-35973245 | 20130731

Soybean Glyma03g40760.1 293 67.9 71.1

LJGI gnl|LJGI|TC70921 1419 99.7 99.7 similar to UniRef100_Q0PH24 Cluster: Auxin-regulated protein; n=1; Populus tomentosa|Rep: Auxin-regulated protein - Populus tomentosa (Chinese white poplar), partial (70%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4984100.1 length: 242 aa.

IPR003311 AUX/IAA protein

method AccNumber shortName E-value location

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF02309 AUX_IAA 6.2e-84 12-241

IPR011525 Aux/IAA-ARF-dimerisation

Molecular Function GO:0046983 protein dimerization activity

ProfileScan PS50962 IAA_ARF 30.406 136-236

no_ID

HMMPanther PTHR31734 FAMILY 1e-100 4-242

Seg seg seg NA 56-75
112-136

superfamily SSF54277 CAD 3.7e-23 123-234

Wolf-PSORT

Lj1g3v4984100.1 chlo 9, nucl 3, mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4984100.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SVA0_MEDTR	295	63.7	69.8	(tr\|I3SVA0) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
TAIR_pep	AT3G04730.1	263	60.8	67.7	\| Symbols: IAA16 \| indoleacetic acid-induced protein 16 \| chr3:1288993-1290415 REVERSE LENGTH=236
Medicago	Medtr1g080860.2	294	64.1	70.2	\| auxin-responsive AUX/IAA family protein \| HC \| chr1:35977175-35973245 \| 20130731
Soybean	Glyma03g40760.1	293	67.9	71.1
LJGI	gnl\|LJGI\|TC70921	1419	99.7	99.7	similar to UniRef100_Q0PH24 Cluster: Auxin-regulated protein; n=1; Populus tomentosa\|Rep: Auxin-regulated protein - Populus tomentosa (Chinese white poplar), partial (70%)

IPR003311	AUX/IAA protein
Lj1g3v4984100.1				length: 242 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	6.2e-84	12-241
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	30.406	136-236
no_ID
HMMPanther	PTHR31734	FAMILY	1e-100	4-242
Seg	seg	seg	NA	56-75 112-136
superfamily	SSF54277	CAD	3.7e-23	123-234