Miyakogusa Predicted Gene

Lj1g3v4957670.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JRL0_SOYBN 1194 83.8 87.7 (tr|I1JRL0) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT1G54490.1 1030 72.3 80.7 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947

Medicago Medtr7g114570.1 1142 80.8 87.0 | 5'-3' exoribonuclease | HC | chr7:47305879-47315956 | 20130731

Soybean Glyma03g40500.1 1190 83.7 87.6

LJGI gnl|LJGI|TC63057 1211 99.8 99.8 similar to UniRef100_A7Q5V8 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4957670.1 length: 688 aa.

IPR001878 Zinc finger, CCHC-type

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:4.10.60.10 no description 0.00018 466-467

HMMPfam PF00098 zf-CCHC 7.1e-05 262-277

HMMSmart SM00343 zinc 0.0013 262-278

ProfileScan PS50158 ZF_CCHC 10.213 262-277

IPR004859 Putative 5-3 exonuclease

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004527 exonuclease activity

Cellular Component GO:0005622 intracellular

HMMPfam PF03159 XRN_N 2.9e-106 1-253

IPR017151 5'-3' exoribonuclease 2

Molecular Function GO:0004534 5'-3' exoribonuclease activity

Cellular Component GO:0005634 nucleus

Biological Process GO:0006139 nucleobase-containing compound metabolic process

HMMPIR PIRSF037239 5'-3' 0 1-688

IPR027073 5'-3' exoribonuclease

HMMPanther PTHR12341 5'->3' 0 2-688

no_ID

Coil coil coiled-coil NA 117-145

Seg seg seg NA 116-137
414-433

Wolf-PSORT

Lj1g3v4957670.1 cyto 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4957670.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JRL0_SOYBN	1194	83.8	87.7	(tr\|I1JRL0) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT1G54490.1	1030	72.3	80.7	\| Symbols: AIN1, EIN5, XRN4, ATXRN4 \| exoribonuclease 4 \| chr1:20350300-20356650 FORWARD LENGTH=947
Medicago	Medtr7g114570.1	1142	80.8	87.0	\| 5'-3' exoribonuclease \| HC \| chr7:47305879-47315956 \| 20130731
Soybean	Glyma03g40500.1	1190	83.7	87.6
LJGI	gnl\|LJGI\|TC63057	1211	99.8	99.8	similar to UniRef100_A7Q5V8 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)

IPR001878	Zinc finger, CCHC-type
Lj1g3v4957670.1				length: 688 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:4.10.60.10	no description	0.00018	466-467
HMMPfam	PF00098	zf-CCHC	7.1e-05	262-277
HMMSmart	SM00343	zinc	0.0013	262-278
ProfileScan	PS50158	ZF_CCHC	10.213	262-277
IPR004859	Putative 5-3 exonuclease
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004527	exonuclease activity
Cellular Component	GO:0005622	intracellular
HMMPfam	PF03159	XRN_N	2.9e-106	1-253
IPR017151	5'-3' exoribonuclease 2
Molecular Function	GO:0004534	5'-3' exoribonuclease activity
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006139	nucleobase-containing compound metabolic process
HMMPIR	PIRSF037239	5'-3'	0	1-688
IPR027073	5'-3' exoribonuclease
HMMPanther	PTHR12341	5'->3'	0	2-688
no_ID
Coil	coil	coiled-coil	NA	117-145
Seg	seg	seg	NA	116-137 414-433