Miyakogusa Predicted Gene

Lj1g3v4955470.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KGT9_SOYBN 1352 85.7 90.7 (tr|K7KGT9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G05090.2 1076 69.6 80.2 | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753
Medicago Medtr7g114370.1 1338 85.1 89.2 | transducin/WD40 repeat protein | HC | chr7:47215859-47206309 | 20130731
Soybean Glyma03g40360.1 1340 84.0 88.8  
LJGI gnl|LJGI|TC67160 2341 99.3 99.3 similar to UniRef100_A7Q5S9 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4955470.1 length: 764 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0023 33-67
75-111
116-155
215-246
253-288
293-328
HMMSmart SM00320 WD40 1.2e+02 19-68
73-111
115-155
207-246
249-288
291-330
333-369
ProfileScan PS50082 WD_REPEATS_2 14.585 122-157
214-255
256-297
IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily
superfamily SSF50998 Quinoprotein 0.0023 342-454
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.7e-58 425-449
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 35.541 31-339
superfamily SSF50978 WD40 1.9e-55 34-369
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 98-112
275-289
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.7e-05 98-112
233-247
275-289
IPR021772 Protein of unknown function DUF3337
HMMPfam PF11816 DUF3337 4e-69 424-762
no_ID  
HMMPanther PTHR19862 FAMILY 0 1-761
HMMPanther PTHR19862:SF5 SUBFAMILY 0 1-761
Seg seg seg NA 174-200
Wolf-PSORT
Lj1g3v4955470.1	chlo 6, nucl 4, chlo_mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4955470.1