Miyakogusa Predicted Gene

Lj1g3v4931770.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7KYQ4_MEDTR 383 79.4 81.1 (tr|G7KYQ4) Nuclear transcription factor Y subunit C-9 OS=Medicago truncatula GN=MTR_7g113680 PE=4 SV=1

TAIR_pep AT1G08970.2 226 56.1 61.5 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9 | chr1:2883144-2883839 FORWARD LENGTH=231

Medicago Medtr7g113680.1 383 79.4 81.1 | nuclear transcription factor Y protein | HC | chr7:46853507-46850661 | 20130731

Soybean Glyma19g42460.1 377 78.6 80.7

LJGI gnl|LJGI|TC60207 1070 100.0 100.0 homologue to UniRef100_Q2HTM1 Cluster: Histone-fold/TFIID-TAF/NF-Y; n=1; Medicago truncatula|Rep: Histone-fold/TFIID-TAF/NF-Y - Medicago truncatula (Barrel medic), partial (98%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4931770.1 length: 258 aa.

IPR003958 Transcription factor CBF/NF-Y/archaeal histone

method AccNumber shortName E-value location

Cellular Component GO:0005622 intracellular

Molecular Function GO:0043565 sequence-specific DNA binding

HMMPfam PF00808 CBFD_NFYB_HMF 5.8e-22 101-164

IPR009072 Histone-fold

Molecular Function GO:0046982 protein heterodimerization activity

Gene3D G3DSA:1.10.20.10 no description 8.5e-37 102-179

superfamily SSF47113 Histone-fold 7e-34 23-174

IPR027170 Transcriptional activator NFYC/HAP5 subunit

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Cellular Component GO:0016602 CCAAT-binding factor complex

HMMPanther PTHR10252:SF6 CCAAT-BINDING 9e-76 66-246

no_ID

HMMPanther PTHR10252 HISTONE-LIKE 9e-76 66-246

Seg seg seg NA 60-89
241-258

Wolf-PSORT

Lj1g3v4931770.1 nucl 11, cyto 1, plas 1, cysk 1, cysk_plas 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4931770.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7KYQ4_MEDTR	383	79.4	81.1	(tr\|G7KYQ4) Nuclear transcription factor Y subunit C-9 OS=Medicago truncatula GN=MTR_7g113680 PE=4 SV=1
TAIR_pep	AT1G08970.2	226	56.1	61.5	\| Symbols: HAP5C, NF-YC9 \| nuclear factor Y, subunit C9 \| chr1:2883144-2883839 FORWARD LENGTH=231
Medicago	Medtr7g113680.1	383	79.4	81.1	\| nuclear transcription factor Y protein \| HC \| chr7:46853507-46850661 \| 20130731
Soybean	Glyma19g42460.1	377	78.6	80.7
LJGI	gnl\|LJGI\|TC60207	1070	100.0	100.0	homologue to UniRef100_Q2HTM1 Cluster: Histone-fold/TFIID-TAF/NF-Y; n=1; Medicago truncatula\|Rep: Histone-fold/TFIID-TAF/NF-Y - Medicago truncatula (Barrel medic), partial (98%)

IPR003958	Transcription factor CBF/NF-Y/archaeal histone
Lj1g3v4931770.1				length: 258 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0043565	sequence-specific DNA binding
HMMPfam	PF00808	CBFD_NFYB_HMF	5.8e-22	101-164
IPR009072	Histone-fold
Molecular Function	GO:0046982	protein heterodimerization activity
Gene3D	G3DSA:1.10.20.10	no description	8.5e-37	102-179
superfamily	SSF47113	Histone-fold	7e-34	23-174
IPR027170	Transcriptional activator NFYC/HAP5 subunit
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Cellular Component	GO:0016602	CCAAT-binding factor complex
HMMPanther	PTHR10252:SF6	CCAAT-BINDING	9e-76	66-246
no_ID
HMMPanther	PTHR10252	HISTONE-LIKE	9e-76	66-246
Seg	seg	seg	NA	60-89 241-258