Miyakogusa Predicted Gene

Lj1g3v4931600.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KYP2_MEDTR 1076 82.0 89.9 (tr|G7KYP2) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g113540 PE=4 SV=1
TAIR_pep AT3G05340.1 786 60.2 73.7 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1524071-1526047 REVERSE LENGTH=658
Medicago Medtr7g113540.1 1076 82.0 89.9 | PPR containing plant-like protein | HC | chr7:46789868-46787166 | 20130731
Soybean Glyma03g39800.1 1153 85.7 91.5  
LJGI gnl|LJGI|TC57431 1598 100.0 100.0 similar to UniRef100_A7PS88 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4931600.1 length: 651 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.27 84-109
291-313
319-349
HMMPfam PF13041 PPR_2 3.7e-10 112-161
216-261
417-465
HMMTigr TIGR00756 PPR: 6.6e-07 84-110
114-143
218-252
420-453
ProfileScan PS51375 PPR 6.708 38-68
112-146
81-111
216-250
185-215
317-351
286-316
251-285
418-452
387-417
453-488
489-523
555-589
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.5e-08 552-581
no_ID  
HMMPanther PTHR24015 FAMILY 3.9e-242 21-650
HMMPanther PTHR24015:SF75 SUBFAMILY 3.9e-242 21-650
Wolf-PSORT
Lj1g3v4931600.1	chlo 11, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4931600.1