Miyakogusa Predicted Gene
- Lj1g3v4916360.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SFE3_MEDTR |
479 |
100.0 |
100.0 |
(tr|I3SFE3) Proteasome subunit alpha type OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT1G16470.2 |
452 |
94.0 |
96.6 |
| Symbols: PAB1 | proteasome subunit PAB1 | chr1:5623122-5625439 FORWARD LENGTH=235 |
| Medicago |
Medtr0167s0060.2 |
479 |
100.0 |
100.0 |
| 20S proteasome alpha subunit E1 | HC | scaffold0167:34636-27853 | 20130731 |
| Soybean |
Glyma08g17810.5 |
476 |
99.1 |
99.1 |
|
| LJGI |
gnl|LJGI|TC66282 |
1403 |
100.0 |
100.0 |
homologue to UniRef100_O23708 Cluster: Proteasome subunit alpha type-2-A; n=1; Arabidopsis thaliana|Rep: Proteasome subunit alpha type-2-A - Arabidopsis thaliana (Mouse-ear cress), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4916360.1 |
length: 235 aa. |
| IPR000426 |
Proteasome, alpha-subunit, N-terminal domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004175 |
endopeptidase activity |
|
|
| Biological Process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
|
| Cellular Component |
GO:0019773 |
proteasome core complex, alpha-subunit complex |
|
|
| HMMPfam |
PF10584 |
Proteasome_A_N |
5.6e-10 |
6-28 |
| HMMSmart |
SM00948 |
Proteasome |
4e-06 |
6-28 |
| PatternScan |
PS00388 |
PROTEASOME_A_1 |
NA |
6-28 |
| IPR001353 |
Proteasome, subunit alpha/beta |
| Molecular Function |
GO:0004298 |
threonine-type endopeptidase activity |
|
|
| Cellular Component |
GO:0005839 |
proteasome core complex |
|
|
| Biological Process |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
|
| HMMPfam |
PF00227 |
Proteasome |
1.5e-61 |
31-213 |
| IPR023332 |
Proteasome A-type subunit |
| Molecular Function |
GO:0004298 |
threonine-type endopeptidase activity |
|
|
| ProfileScan |
PS51475 |
PROTEASOME_A_2 |
64.349 |
32-213 |
| no_ID |
|
| Gene3D |
G3DSA:3.60.20.10 |
no description |
3.5e-91 |
4-231 |
| HMMPanther |
PTHR11599 |
PROTEASOME |
9.2e-163 |
2-235 |
| HMMPanther |
PTHR11599:SF16 |
PROTEASOME |
9.2e-163 |
2-235 |
| superfamily |
SSF56235 |
N-terminal |
7.7e-79 |
4-235 |
- Wolf-PSORT
Lj1g3v4916360.1 cyto 7, chlo 3, nucl 2, plas 1, extr 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4916360.1 |
|