Miyakogusa Predicted Gene

Lj1g3v4915280.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KG97_SOYBN 1366 69.5 77.8 (tr|K7KG97) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT4G02560.2 461 54.9 69.8 | Symbols: LD | Homeodomain-like superfamily protein | chr4:1123656-1128252 REVERSE LENGTH=953

Medicago Medtr7g108390.1 1181 64.1 73.5 | homeobox protein luminidependens protein, putative | HC | chr7:44122447-44133205 | 20130731

Soybean Glyma19g39620.1 1241 63.6 70.8

LJGI gnl|LJGI|FS326852 1193 99.8 99.8 similar to UniRef100_Q38796 Cluster: Homeobox protein LUMINIDEPENDENS; n=2; Brassicaceae|Rep: Homeobox protein LUMINIDEPENDENS - Arabidopsis thaliana (Mouse-ear cress), partial (14%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4915280.1 length: 1010 aa.

IPR001356 Homeodomain

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0043565 sequence-specific DNA binding

HMMSmart SM00389 Homeodomain 0.00048 68-130

ProfileScan PS50071 HOMEOBOX_2 9.944 66-126

IPR009057 Homeodomain-like

Molecular Function GO:0003677 DNA binding

Gene3D G3DSA:1.10.10.60 no description 8.5e-05 69-132

superfamily SSF46689 Homeodomain-like 3.1e-08 67-134

IPR017923 Transcription factor IIS, N-terminal

Molecular Function GO:0003677 DNA binding

Cellular Component GO:0005634 nucleus

Biological Process GO:0006351 transcription, DNA-dependent

Gene3D G3DSA:1.20.930.10 no description 3.3e-05 221-314

superfamily SSF47676 Conserved 6.3e-07 220-322

no_ID

HMMPanther PTHR12506 PROTEIN 1.4e-129 11-315

HMMPanther PTHR12506:SF12 LD 1.4e-129 11-315

Seg seg seg NA 252-264
628-642
677-691
868-881

Wolf-PSORT

Lj1g3v4915280.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4915280.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KG97_SOYBN	1366	69.5	77.8	(tr\|K7KG97) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT4G02560.2	461	54.9	69.8	\| Symbols: LD \| Homeodomain-like superfamily protein \| chr4:1123656-1128252 REVERSE LENGTH=953
Medicago	Medtr7g108390.1	1181	64.1	73.5	\| homeobox protein luminidependens protein, putative \| HC \| chr7:44122447-44133205 \| 20130731
Soybean	Glyma19g39620.1	1241	63.6	70.8
LJGI	gnl\|LJGI\|FS326852	1193	99.8	99.8	similar to UniRef100_Q38796 Cluster: Homeobox protein LUMINIDEPENDENS; n=2; Brassicaceae\|Rep: Homeobox protein LUMINIDEPENDENS - Arabidopsis thaliana (Mouse-ear cress), partial (14%)

IPR001356	Homeodomain
Lj1g3v4915280.1				length: 1010 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0043565	sequence-specific DNA binding
HMMSmart	SM00389	Homeodomain	0.00048	68-130
ProfileScan	PS50071	HOMEOBOX_2	9.944	66-126
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	8.5e-05	69-132
superfamily	SSF46689	Homeodomain-like	3.1e-08	67-134
IPR017923	Transcription factor IIS, N-terminal
Molecular Function	GO:0003677	DNA binding
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006351	transcription, DNA-dependent
Gene3D	G3DSA:1.20.930.10	no description	3.3e-05	221-314
superfamily	SSF47676	Conserved	6.3e-07	220-322
no_ID
HMMPanther	PTHR12506	PROTEIN	1.4e-129	11-315
HMMPanther	PTHR12506:SF12	LD	1.4e-129	11-315
Seg	seg	seg	NA	252-264 628-642 677-691 868-881