Miyakogusa Predicted Gene

Lj1g3v4896960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1NB55_SOYBN 2230 74.0 83.1 (tr|I1NB55) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT2G47800.1 1947 64.2 76.3 | Symbols: ATMRP4, EST3, MRP4, ABCC4 | multidrug resistance-associated protein 4 | chr2:19574944-19580383 FORWARD LENGTH=1516
Medicago Medtr1g088680.1 2143 71.0 81.1 | multidrug resistance protein ABC transporter family protein | HC | chr1:39668018-39660482 | 20130731
Soybean Glyma19g39810.1 2230 74.0 83.1  
LJGI gnl|LJGI|AV778059 1098 99.6 99.6 similar to UniRef100_A7Q0B2 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (3%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4896960.1 length: 1550 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2.7e-28 379-641
1024-1256
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1e-17 730-838
1349-1473
ProfileScan PS50893 ABC_TRANSPORTER_2 18.087 688-911
1310-1542
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.2e-10 715-896
1334-1527
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 7.3e-33 964-1298
351-663
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 813-827
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 30.799 374-654
993-1271
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.5e-51 1287-1528
688-897
no_ID  
Coil coil coiled-coil NA 1179-1200
Gene3D G3DSA:1.20.1560.10 no description 1.3e-54 363-666
989-1288
Gene3D G3DSA:3.40.50.300 no description 2.6e-64 692-913
1309-1542
HMMPanther PTHR24223 FAMILY 0 113-1550
HMMPanther PTHR24223:SF106GTP BINDING 0 113-1550
Seg seg seg NA 15-38
47-60
89-111
137-159
246-261
269-282
1039-1046
1213-1223
Wolf-PSORT
Lj1g3v4896960.1	chlo 10.5, chlo_mito 6.5, plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4896960.1