Miyakogusa Predicted Gene

Lj1g3v4862840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NBC1_SOYBN 962 83.9 90.8 (tr|I1NBC1) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G02070.2 750 67.6 80.3 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930 FORWARD LENGTH=1321
Medicago Medtr7g109470.1 945 81.4 90.4 | DNA mismatch repair MSH3-like protein | HC | chr7:44767037-44759016 | 20130731
Soybean Glyma19g40350.1 962 83.9 90.8  
LJGI gnl|LJGI|TC75554 551 100.0 100.0 similar to UniRef100_A7Q0L8 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (3%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4862840.1 length: 554 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF00488 MutS_V 5.5e-78 262-492
HMMSmart SM00534 ATPase 1.6e-107 296-488
IPR007696 DNA mismatch repair protein MutS, core
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05192 MutS_III 1.9e-09 2-236
HMMSmart SM00533 DNA-binding 2.9e-15 2-276
superfamily SSF48334 DNA 3.4e-33 1-243
IPR007861 DNA mismatch repair protein MutS, clamp
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05190 MutS_IV 9e-17 105-196
IPR015536 DNA mismatch repair protein MutS-homologue MSH6
HMMPanther PTHR11361:SF31 MUTS 3.8e-220 1-524
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.2e-52 246-494
no_ID  
Coil coil coiled-coil NA 183-204
Gene3D G3DSA:3.40.50.300 no description 8.2e-70 247-491
HMMPanther PTHR11361 DNA 3.8e-220 1-524
Wolf-PSORT
Lj1g3v4862840.1	chlo 8, mito 3, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4862840.1