Miyakogusa Predicted Gene

Lj1g3v4848440.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NBD6_SOYBN 1058 82.6 86.7 (tr|I1NBD6) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT2G47330.1 913 73.2 82.0 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19429083-19431617 REVERSE LENGTH=760
Medicago Medtr7g109720.1 1058 82.1 86.1 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr7:44909506-44914537 | 20130731
Soybean Glyma19g40510.1 1058 82.6 86.7  
LJGI gnl|LJGI|TC73242 1915 99.7 99.7 similar to UniRef100_A7Q0P4 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4848440.1 length: 704 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 332-340
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.9e-25 444-520
HMMSmart SM00490 helicase 4e-32 439-520
ProfileScan PS51194 HELICASE_CTER 22.609 411-560
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 5.3e-47 204-375
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.7e-64 199-401
ProfileScan PS51192 HELICASE_ATP_BIND_1 31.666 211-386
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 12.368 180-208
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.2e-52 160-389
324-578
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.9e-44 163-391
392-556
HMMPanther PTHR24031 FAMILY 1.4e-299 17-662
HMMPanther PTHR24031:SF125SUBFAMILY NOT 1.4e-299 17-662
Seg seg seg NA 2-16
40-65
410-421
562-596
641-654
Wolf-PSORT
Lj1g3v4848440.1	chlo 4, nucl 4, cyto 3, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4848440.1