Miyakogusa Predicted Gene
- Lj1g3v4831860.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MZL6_SOYBN |
478 |
81.6 |
89.9 |
(tr|K7MZL6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G47210.1 |
385 |
63.6 |
80.1 |
| Symbols: | myb-like transcription factor family protein | chr2:19379039-19382204 FORWARD LENGTH=441 |
| Medicago |
Medtr7g109870.1 |
468 |
78.5 |
89.4 |
| DNA methyltransferase 1-associated protein | HC | chr7:45020685-45015335 | 20130731 |
| Soybean |
Glyma19g40630.1 |
477 |
81.6 |
89.9 |
|
| LJGI |
gnl|LJGI|TC61813 |
1451 |
98.8 |
98.8 |
similar to UniRef100_A7Q0S3 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (54%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4831860.1 |
length: 287 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMSmart |
SM00717 |
SANT |
6.1e-06 |
124-173 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
2.4e-05 |
122-172 |
| superfamily |
SSF46689 |
Homeodomain-like |
1.9e-07 |
119-173 |
| IPR027109 |
SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1 |
| Biological Process |
GO:0006281 |
DNA repair |
|
|
| Biological Process |
GO:0006338 |
chromatin remodeling |
|
|
| Cellular Component |
GO:0035267 |
NuA4 histone acetyltransferase complex |
|
|
| Biological Process |
GO:0043967 |
histone H4 acetylation |
|
|
| Biological Process |
GO:0043968 |
histone H2A acetylation |
|
|
| HMMPanther |
PTHR12855 |
FAMILY |
3.4e-146 |
1-268 |
| no_ID |
|
| HMMPanther |
PTHR12855:SF5 |
GB |
3.4e-146 |
1-268 |
| HMMPfam |
PF13921 |
Myb_DNA-bind_6 |
0.00012 |
128-170 |
- Wolf-PSORT
Lj1g3v4831860.1 nucl 7, cyto 2, mito 2, plas 1, extr 1, cysk 1, chlo_mito 1, cyto_mito 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4831860.1 |
|