Miyakogusa Predicted Gene

Lj1g3v4830280.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MZM9_SOYBN 1519 85.9 89.8 (tr|K7MZM9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G01810.1 1298 72.3 81.7 | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880
Medicago Medtr7g110640.1 1427 82.6 85.4 | protein transporter Sec23-like protein | HC | chr7:45343900-45348480 | 20130731
Soybean Glyma19g40920.1 1519 85.9 89.8  
LJGI gnl|LJGI|TC69351 1518 99.7 99.7 similar to UniRef100_A7Q0Z5 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4830280.1 length: 873 aa.
IPR002035 von Willebrand factor, type A
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:3.40.50.410 no description 2.7e-41 276-518
IPR006895 Zinc finger, Sec23/Sec24-type
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Molecular Function GO:0008270 zinc ion binding    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04810 zf-Sec23_Sec24 5.5e-11 194-233
superfamily SSF82919 Zn-finger 2.4e-17 183-259
IPR006896 Sec23/Sec24, trunk domain
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04811 Sec23_trunk 2.7e-12 277-502
IPR006900 Sec23/Sec24, helical domain
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04815 Sec23_helical 9.6e-14 625-723
superfamily SSF81811 Helical 4.3e-28 623-725
IPR012990 Sec23/Sec24 beta-sandwich
HMMPfam PF08033 Sec23_BS 6.4e-11 520-611
no_ID  
Gene3D G3DSA:2.60.40.1670 no description 3.1e-06 530-608
Gene3D G3DSA:3.40.20.10 no description 2.9e-17 726-840
HMMPanther PTHR11141 PROTEIN 2.8e-193 153-873
Seg seg seg NA 103-127
777-792
superfamily SSF53300 vWA-like 2.7e-38 277-515
superfamily SSF81995 beta-sandwich 6.2e-26 41-622
superfamily SSF82754 C-terminal, 9.7e-28 726-871
Wolf-PSORT
Lj1g3v4830280.1	nucl 6, chlo 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4830280.1