Miyakogusa Predicted Gene
- Lj1g3v4830100.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KFW5_MEDTR |
189 |
96.6 |
97.7 |
(tr|G7KFW5) Pre-mRNA-splicing factor 38B OS=Medicago truncatula GN=MTR_5g077180 PE=4 SV=1 |
| TAIR_pep |
AT5G37370.2 |
166 |
86.2 |
92.0 |
| Symbols: ATSRL1 | PRP38 family protein | chr5:14812845-14815988 REVERSE LENGTH=385 |
| Medicago |
Medtr5g077180.2 |
189 |
96.6 |
97.7 |
| pre-mRNA-splicing factor | HC | chr5:32943383-32936664 | 20130731 |
| Soybean |
Glyma14g39220.1 |
181 |
95.5 |
96.6 |
|
| LJGI |
gnl|LJGI|TC62380 |
391 |
93.6 |
93.6 |
similar to UniRef100_A7PYY5 Cluster: Chromosome chr4 scaffold_39, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_39, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4830100.3 |
length: 88 aa. |
| IPR005037 |
Pre-mRNA-splicing factor 38 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR23142 |
UNCHARACTERIZED |
7.3e-37 |
13-88 |
| HMMPfam |
PF03371 |
PRP38 |
1.3e-19 |
12-88 |
- Wolf-PSORT
Lj1g3v4830100.3 nucl 4, cyto 3.5, cyto_E.R. 2.5, mito 2, chlo 1, plas 1, pero 1, cysk 1, cyto_mito 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4830100.3 |
|