Miyakogusa Predicted Gene

Lj1g3v4819960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQZ7_SOYBN 2105 83.1 86.1 (tr|I1JQZ7) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G24710.1 1853 76.3 84.8 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377
Medicago Medtr7g111080.1 2155 81.5 84.5 | transducin/WD40 repeat protein | HC | chr7:45556144-45577337 | 20130731
Soybean Glyma03g38530.1 2093 82.9 85.8  
LJGI gnl|LJGI|TC67157 1413 99.9 99.9 similar to UniRef100_A7Q9S5 Cluster: Chromosome chr8 scaffold_68, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr8 scaffold_68, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4819960.1 length: 1328 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00320 WD40 0.29 1-39
198-241
250-292
ProfileScan PS50082 WD_REPEATS_2 8.771 257-301
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.3e-27 364-408
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 13.079 163-301
superfamily SSF50978 WD40 7e-26 1-302
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 279-293
no_ID  
Coil coil coiled-coil NA 751-772
HMMPanther PTHR22847 WD40 6.2e-144 77-1174
HMMPanther PTHR22847:SF229WD-REPEAT FAMILY 6.2e-144 77-1174
Seg seg seg NA 555-567
598-609
613-627
632-642
844-858
867-882
1191-1205
1210-1229
1292-1312
Wolf-PSORT
Lj1g3v4819960.1	nucl 5, chlo 4, mito 2, plas 1, cysk 1, golg 1, cyto_mito 1, golg_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4819960.1