Miyakogusa Predicted Gene

Lj1g3v4819930.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NBL1_SOYBN 996 77.8 85.6 (tr|I1NBL1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G26742.2 889 69.6 81.7 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | chr5:9285540-9288871 REVERSE LENGTH=748
Medicago Medtr5g090120.1 493 63.2 77.4 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr5:39247084-39252313 | 20130731
Soybean Glyma19g41150.1 996 77.8 85.6  
LJGI gnl|LJGI|TC81916 664 99.4 99.4 similar to UniRef100_Q2HUZ8 Cluster: Helicase, C-terminal; Zinc finger, CCHC-type; GUCT; n=1; Medicago truncatula|Rep: Helicase, C-terminal; Zinc finger, CCHC-type; GUCT - Medicago truncatula (Barrel medic), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4819930.1 length: 768 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 7.8e-25 374-445
HMMSmart SM00490 helicase 8.7e-32 365-445
ProfileScan PS51194 HELICASE_CTER 22.773 340-485
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 7.1e-05 743-762
HMMPfam PF00098 zf-CCHC 6.4e-06 745-761
HMMSmart SM00343 zinc 6.8e-05 745-761
ProfileScan PS50158 ZF_CCHC 10.790 746-761
superfamily SSF57756 Retrovirus 2.1e-06 721-765
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.3e-46 127-300
IPR012562 GUCT
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF08152 GUCT 7.3e-25 532-633
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.7e-59 121-328
ProfileScan PS51192 HELICASE_ATP_BIND_1 31.622 133-311
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 7.635 102-130
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.5e-72 179-468
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.1e-48 100-319
320-478
HMMPanther PTHR24031 FAMILY 4.8e-246 61-741
HMMPanther PTHR24031:SF107HELICASE CONSERVED 4.8e-246 61-741
Seg seg seg NA 65-72
522-528
550-561
642-715
729-737
Wolf-PSORT
Lj1g3v4819930.1	chlo 11, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4819930.1