Miyakogusa Predicted Gene

Lj1g3v4764260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQF9_SOYBN 686 80.3 83.0 (tr|I1JQF9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G03110.1 518 63.2 72.9 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441
Medicago Medtr7g107580.1 698 82.8 84.7 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr7:43890650-43885583 | 20130731
Soybean Glyma03g36650.1 686 80.3 83.0  
LJGI gnl|LJGI|TC75302 1142 100.0 100.0 homologue to UniRef100_A7PU04 Cluster: Chromosome chr7 scaffold_31, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_31, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4764260.1 length: 440 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.9e-18 26-90
114-180
357-427
HMMSmart SM00360 RNA 6.8e-25 25-101
113-188
356-429
ProfileScan PS50102 RRM 17.541 24-105
112-192
355-433
IPR002343 Paraneoplastic encephalomyelitis antigen
Molecular Function GO:0003723 RNA binding    
FPrintScan PR00961 HUDSXLRNA 1.1e-07 24-39
117-132
132-144
173-190
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 3.6e-26 6-105
110-203
340-438
no_ID  
HMMPanther PTHR24011 FAMILY 3.7e-91 11-440
Seg seg seg NA 5-23
193-209
312-347
superfamily SSF54928 RNA-binding 7.4e-19 111-440
19-108
Wolf-PSORT
Lj1g3v4764260.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4764260.1