Miyakogusa Predicted Gene

Lj1g3v4763860.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MT78_SOYBN 737 66.4 70.1 (tr|I1MT78) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G31200.1 429 52.6 63.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650
Medicago Medtr1g092770.1 695 63.5 67.7 | suppressor-of-white-APricot splicing regulator, putative | HC | chr1:41769142-41763148 | 20130731
Soybean Glyma17g08720.1 737 66.4 70.1  
LJGI gnl|LJGI|TC58658 2698 99.8 99.8 similar to UniRef100_A7Q6W4 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4763860.1 length: 689 aa.
IPR000061 SWAP/Surp
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
HMMPfam PF01805 Surp 4.5e-15 128-176
HMMSmart SM00648 Suppressor-of-White-APricot 7.9e-17 128-180
ProfileScan PS50128 SURP 11.896 130-174
superfamily SSF109905 Surp 1.7e-17 98-188
IPR006569 CID domain
HMMSmart SM00582 no description 0.00094 270-405
ProfileScan PS51391 CID 29.545 267-408
IPR006903 RNA polymerase II-binding domain
HMMPfam PF04818 CTD_bind 7.5e-06 324-393
IPR008942 ENTH/VHS
superfamily SSF48464 ENTH/VHS 2e-06 264-413
no_ID  
HMMPanther PTHR12323 SR-RELATED 2.5e-112 117-682
Seg seg seg NA 9-42
48-63
65-97
108-125
192-210
226-243
414-431
520-532
553-568
591-607
642-652
Wolf-PSORT
Lj1g3v4763860.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4763860.1