Miyakogusa Predicted Gene

Lj1g3v4753240.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NAX3_SOYBN 1070 82.0 89.9 (tr|I1NAX3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G06540.1 827 62.5 79.4 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1999181-2001049 REVERSE LENGTH=622
Medicago Medtr7g106930.1 719 73.4 82.8 | pentatricopeptide (PPR) repeat protein | HC | chr7:43569310-43567382 | 20130731
Soybean Glyma19g39000.1 1017 82.7 90.7  
LJGI gnl|LJGI|FS346205 1078 100.0 100.0 similar to UniRef100_A7Q044 Cluster: Chromosome chr8 scaffold_41, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_41, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4753240.1 length: 620 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.024 183-211
214-244
387-412
HMMPfam PF13041 PPR_2 3e-11 312-360
HMMTigr TIGR00756 PPR: 9.8e-05 183-213
214-247
287-314
316-347
350-383
ProfileScan PS51375 PPR 6.632 80-114
115-149
212-246
181-211
150-180
313-347
282-312
247-281
348-383
384-418
450-484
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.7e-05 443-469
no_ID  
HMMPanther PTHR24015 FAMILY 4.1e-299 24-620
HMMPanther PTHR24015:SF61 PGR3 4.1e-299 24-620
HMMPfam PF14432 DYW_deaminase 9.9e-18 498-610
Wolf-PSORT
Lj1g3v4753240.1	chlo 5, extr 3, nucl 2, vacu 2, plas 1, E.R. 1, cyto_nucl 1, cysk_nucl 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4753240.1