Miyakogusa Predicted Gene
- Lj1g3v4730390.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1N684_SOYBN |
552 |
83.9 |
88.3 |
(tr|I1N684) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT3G09180.1 |
377 |
59.7 |
74.6 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402 |
| Medicago |
Medtr7g106200.1 |
535 |
81.1 |
86.8 |
| mediator of RNA polymerase II transcription subunit 27 | HC | chr7:43159768-43164789 | 20130731 |
| Soybean |
Glyma19g03150.1 |
552 |
83.9 |
88.3 |
|
| LJGI |
gnl|LJGI|TC65373 |
1439 |
98.9 |
98.9 |
similar to UniRef100_A7QA21 Cluster: Chromosome chr8 scaffold_68, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_68, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4730390.1 |
length: 317 aa. |
| IPR021627 |
Mediator complex, subunit Med27 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF11571 |
Med27 |
2.6e-21 |
192-312 |
| no_ID |
|
| HMMPanther |
PTHR13130 |
34 |
4.6e-92 |
1-315 |
| HMMPanther |
PTHR13130:SF2 |
UNKNOWN |
4.6e-92 |
1-315 |
| Seg |
seg |
seg |
NA |
133-145 |
- Wolf-PSORT
Lj1g3v4730390.1 chlo 4, E.R. 4, nucl 2, cyto 1, mito 1, plas 1, vacu 1, cysk_nucl 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4730390.1 |
|