Miyakogusa Predicted Gene

Lj1g3v4719640.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9HBX4_POPTR 499 69.6 82.9 (tr|B9HBX4) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561472 PE=4 SV=1
TAIR_pep AT3G26640.1 356 50.9 69.0 | Symbols: LWD2 | Transducin/WD40 repeat-like superfamily protein | chr3:9793276-9794316 FORWARD LENGTH=346
Medicago Medtr7g084810.1 353 50.3 68.4 | transducin/WD-like repeat-protein | HC | chr7:32739181-32737587 | 20130731
Soybean Glyma19g28250.1 359 51.5 69.7  
LJGI gnl|LJGI|TC79754 1021 100.0 100.0 similar to UniRef100_Q2QDD4 Cluster: TTG1-like protein; n=1; Gossypium hirsutum|Rep: TTG1-like protein - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4719640.1 length: 352 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 8.5e-05 134-165
175-206
260-297
HMMSmart SM00320 WD40 0.00027 121-165
168-206
257-297
ProfileScan PS50082 WD_REPEATS_2 10.074 175-215
264-298
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.3e-34 30-342
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.136 132-306
superfamily SSF50978 WD40 1.4e-31 29-346
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 152-166
284-298
no_ID  
HMMPanther PTHR19919 WD 1.2e-135 23-352
Wolf-PSORT
Lj1g3v4719640.1	cysk 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4719640.1