Miyakogusa Predicted Gene

Lj1g3v4717390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQ30_SOYBN 539 70.6 76.7 (tr|I1JQ30) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G52660.2 405 63.2 82.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471
Medicago Medtr7g104800.2 520 61.0 66.9 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:42489150-42483010 | 20130731
Soybean Glyma03g35450.2 539 70.6 76.7  
LJGI gnl|LJGI|TC82005 1094 99.6 99.6 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined scaffold_87, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_87, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4717390.1 length: 496 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 6.3e-17 120-190
200-267
294-363
HMMSmart SM00360 RNA 2.8e-18 119-192
199-276
293-366
ProfileScan PS50102 RRM 15.920 118-196
198-280
292-370
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 0.00041 119-192
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2.8e-35 116-197
201-379
no_ID  
Coil coil coiled-coil NA 43-86
HMMPanther PTHR24011 FAMILY 5.6e-163 1-488
HMMPanther PTHR24011:SF134SUBFAMILY NOT 5.6e-163 1-488
Seg seg seg NA 16-29
45-83
396-417
421-441
448-459
466-492
superfamily SSF54928 RNA-binding 1.2e-21 112-287
285-402
Wolf-PSORT
Lj1g3v4717390.1	nucl 12, chlo 1, plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4717390.1