Miyakogusa Predicted Gene

Lj1g3v4717280.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQ18_SOYBN 612 89.7 94.4 (tr|I1JQ18) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G26060.1 493 68.7 81.0 | Symbols: emb1345 | Transducin/WD40 repeat-like superfamily protein | chr2:11102400-11105127 FORWARD LENGTH=352
Medicago Medtr7g104550.1 611 89.0 95.1 | cytosolic iron-sulfur protein assembly protein, putative | HC | chr7:42371981-42367441 | 20130731
Soybean Glyma03g35310.1 612 89.7 94.4  
LJGI gnl|LJGI|TC69157 2038 99.9 99.9 similar to UniRef100_A7PPE1 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4717280.1 length: 343 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 9.4e-10 8-50
58-97
104-141
149-185
205-236
259-286
305-339
HMMSmart SM00320 WD40 6.5e-07 5-50
57-97
102-141
147-186
193-236
248-287
294-339
ProfileScan PS50082 WD_REPEATS_2 14.352 12-50
65-97
109-143
154-185
204-245
306-343
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-71 7-43
44-342
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 49.065 12-343
superfamily SSF50978 WD40 4.7e-66 2-339
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 84-98
128-142
223-237
326-340
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 7e-07 37-51
223-237
326-340
no_ID  
HMMPanther PTHR19920 WD40 8.5e-161 1-343
HMMPanther PTHR19920:SF0 SUBFAMILY 8.5e-161 1-343
Wolf-PSORT
Lj1g3v4717280.1	nucl 7, cyto 5, chlo 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4717280.1