Miyakogusa Predicted Gene

Lj1g3v4694450.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SLP5_LOTJA 452 72.6 72.6 (tr|I3SLP5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G42820.1 293 74.9 83.8 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283
Medicago Medtr7g103630.1 345 83.4 84.4 | splicing factor U2af small subunit A-like protein | HC | chr7:41947426-41950345 | 20130731
Soybean Glyma19g37530.1 346 85.9 88.5  
LJGI gnl|LJGI|TC61700 1895 99.9 99.9 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (74%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4694450.1 length: 318 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.1e-05 89-145
ProfileScan PS50102 RRM 10.241 60-152
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 8.2e-07 14-37
HMMSmart SM00356 zinc 0.41 13-39
154-180
ProfileScan PS50103 ZF_C3H1 10.465 12-40
154-181
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 1.3e-06 73-148
IPR009145 U2 auxiliary factor small subunit
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
FPrintScan PR01848 U2AUXFACTOR 8.6e-63 18-37
37-57
81-96
109-131
136-160
171-183
HMMPanther PTHR12620 U2 3.9e-138 1-304
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.1e-22 44-151
no_ID  
Seg seg seg NA 64-83
192-217
224-262
superfamily SSF54928 RNA-binding 1.7e-17 30-161
superfamily SSF90229 CCCH 0.006 152-180
10-39
Wolf-PSORT
Lj1g3v4694450.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4694450.1