Miyakogusa Predicted Gene

Lj1g3v4694400.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MZ61_SOYBN 1006 73.2 84.5 (tr|K7MZ61) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G12100.1 688 46.9 66.4 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:3911388-3913838 FORWARD LENGTH=816
Medicago Medtr7g103600.1 1050 65.5 79.2 | pentatricopeptide (PPR) repeat protein | HC | chr7:41923424-41925949 | 20130731
Soybean Glyma03g34810.1 1064 67.4 77.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4694400.1 length: 779 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1.2e-05 641-671
HMMPfam PF12854 PPR_1 6.2e-08 259-289
325-350
495-527
HMMPfam PF13041 PPR_2 7.6e-11 190-239
360-408
433-478
536-582
674-722
HMMPfam PF13812 PPR_3 0.53 126-155
HMMTigr TIGR00756 PPR: 2e-05 126-157
194-227
228-254
263-295
328-360
362-395
397-430
433-466
467-501
503-532
537-571
572-605
641-671
676-708
712-744
ProfileScan PS51375 PPR 5.459 86-120
121-155
191-225
156-190
226-260
261-295
325-359
360-394
395-429
430-464
465-499
500-534
535-569
570-604
639-673
674-708
709-743
744-778
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.5e-10 620-669
no_ID  
HMMPanther PTHR24015 FAMILY 4.4e-178 6-719
HMMPanther PTHR24015:SF0 SUBFAMILY 4.4e-178 6-719
Seg seg seg NA 13-34
63-78
superfamily SSF81901 HCP-like 4.6e-06 498-681
327-472
Wolf-PSORT
Lj1g3v4694400.1	chlo 7, plas 3, nucl 2, mito_plas 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4694400.1