Miyakogusa Predicted Gene

Lj1g3v4692840.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7ITS0_MEDTR 206 54.9 65.6 (tr|G7ITS0) PIF-like protein OS=Medicago truncatula GN=MTR_2g086350 PE=4 SV=1

TAIR_pep AT5G05800.2 62.8 27.3 42.0 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:1743234-1744751 REVERSE LENGTH=449

Medicago Medtr2g018710.1 204 54.0 63.6 | Myb/SANT-like DNA-binding domain protein | HC | chr2:5920293-5919025 | 20130731

Soybean Glyma01g06250.1 145 42.6 58.0

LJGI gnl|LJGI|TC68016 194 100.0 100.0 similar to UniRef100_A2Q2Z0 Cluster: SAM (And some other nucleotide) binding motif; n=1; Medicago truncatula|Rep: SAM (And some other nucleotide) binding motif - Medicago truncatula (Barrel medic), partial (98%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4692840.1 length: 260 aa.

IPR024752 Myb/SANT-like domain

method AccNumber shortName E-value location

HMMPfam PF12776 Myb_DNA-bind_3 2.8e-21 70-163

no_ID

Seg seg seg NA 115-128

Wolf-PSORT

Lj1g3v4692840.1 chlo 5, E.R. 3, cyto 2, E.R._vacu 2, E.R._plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4692840.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7ITS0_MEDTR	206	54.9	65.6	(tr\|G7ITS0) PIF-like protein OS=Medicago truncatula GN=MTR_2g086350 PE=4 SV=1
TAIR_pep	AT5G05800.2	62.8	27.3	42.0	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr5:1743234-1744751 REVERSE LENGTH=449
Medicago	Medtr2g018710.1	204	54.0	63.6	\| Myb/SANT-like DNA-binding domain protein \| HC \| chr2:5920293-5919025 \| 20130731
Soybean	Glyma01g06250.1	145	42.6	58.0
LJGI	gnl\|LJGI\|TC68016	194	100.0	100.0	similar to UniRef100_A2Q2Z0 Cluster: SAM (And some other nucleotide) binding motif; n=1; Medicago truncatula\|Rep: SAM (And some other nucleotide) binding motif - Medicago truncatula (Barrel medic), partial (98%)

IPR024752	Myb/SANT-like domain
Lj1g3v4692840.1				length: 260 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF12776	Myb_DNA-bind_3	2.8e-21	70-163
no_ID
Seg	seg	seg	NA	115-128