Miyakogusa Predicted Gene

Lj1g3v4691700.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L4Y5_MEDTR 929 75.6 83.7 (tr|G7L4Y5) Polyadenylate binding protein OS=Medicago truncatula GN=MTR_7g102730 PE=4 SV=1
TAIR_pep AT2G36660.1 563 48.1 64.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609
Medicago Medtr7g102730.1 938 76.0 84.0 | polyadenylate-binding protein | HC | chr7:41652502-41656607 | 20130731
Soybean Glyma03g34580.1 917 75.4 85.1  
LJGI gnl|LJGI|TC75640 690 92.8 92.8 similar to UniRef100_A7QJ95 Cluster: Chromosome chr8 scaffold_106, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_106, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4691700.1 length: 636 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.1e-19 14-84
102-170
193-260
296-364
HMMSmart SM00360 RNA 1.7e-28 13-86
101-173
192-264
295-367
ProfileScan PS50102 RRM 19.690 12-90
100-177
191-268
294-371
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
Molecular Function GO:0003723 RNA binding    
Gene3D G3DSA:1.10.1900.10 no description 8.4e-30 541-621
HMMPfam PF00658 PABP 7.4e-28 543-611
HMMSmart SM00517 C-terminal 6.9e-32 551-614
ProfileScan PS51309 PABC 19.257 539-616
superfamily SSF63570 PABC 5.1e-35 470-633
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 1.4 101-173
192-264
295-367
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
Molecular Function GO:0003723 RNA binding    
HMMTigr TIGR01628 PABP-1234: 7.7e-214 12-612
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 8e-31 11-95
101-181
184-273
286-377
no_ID  
Coil coil coiled-coil NA 263-284
HMMPanther PTHR24011 FAMILY 1.2e-214 1-623
HMMPanther PTHR24011:SF45 SUBFAMILY 1.2e-214 1-623
Seg seg seg NA 2-13
457-471
485-497
582-601
superfamily SSF54928 RNA-binding 3.5e-45 185-378
11-181
Wolf-PSORT
Lj1g3v4691700.1	nucl 11, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4691700.1